Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
GATA3_Veh
cell line
MCF-7
cell type
breast cancer cells
stimulated with
Vehicle
chip antibody
anti-GATA3
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM986072: GATA3_Veh_r3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
30969123
Reads aligned (%)
83.0
Duplicates removed (%)
15.0
Number of peaks
3392 (qval < 1E-05)

hg38

Number of total reads
30969123
Reads aligned (%)
85.2
Duplicates removed (%)
13.5
Number of peaks
3314 (qval < 1E-05)

Base call quality data from DBCLS SRA