SRX176868
GSM986071: GATA3 E2 r3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GATA3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
GATA3_estrogen
cell line
MCF-7
cell type
breast cancer cells
stimulated with
E2 at final conc. 100nM for 3 hrs
chip antibody
anti-GATA3
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM986071: GATA3_E2_r3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35745318
Reads aligned (%)
98.2
Duplicates removed (%)
53.9
Number of peaks
1561 (qval < 1E-05)

hg19

Number of total reads
35745318
Reads aligned (%)
97.6
Duplicates removed (%)
55.0
Number of peaks
1771 (qval < 1E-05)

Base call quality data from DBCLS SRA