SRX176861
GSM986064: siGATA ER E2 r3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
siGATA_ER_estrogen
cell line
MCF-7
cell type
breast cancer cells
stimulated with
E2 at final conc. 100nM for 3 hrs
genotype/variation
GATA knockdown
tranfected with
ON-TARGET plus siRNA J-0033781-09, siGATA3-Custom-1, siGATA3-Custom-2
chip antibody
anti-ERa
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM986064: siGATA_ER_E2_r3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
35210153
Reads aligned (%)
78.4
Duplicates removed (%)
20.7
Number of peaks
71864 (qval < 1E-05)

hg38

Number of total reads
35210153
Reads aligned (%)
79.5
Duplicates removed (%)
20.0
Number of peaks
72023 (qval < 1E-05)

Base call quality data from DBCLS SRA