SRX176859
GSM986062: siGATA ER E2 r2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
siGATA_ER_estrogen
cell line
MCF-7
cell type
breast cancer cells
stimulated with
E2 at final conc. 100nM for 3 hrs
genotype/variation
GATA knockdown
tranfected with
ON-TARGET plus siRNA J-0033781-09, siGATA3-Custom-1, siGATA3-Custom-2
chip antibody
anti-ERa
chip antibody vendor
Santa Cruz

Sequenced DNA Library

library_name
GSM986062: siGATA_ER_E2_r2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16503175
Reads aligned (%)
97.2
Duplicates removed (%)
7.9
Number of peaks
19151 (qval < 1E-05)

hg19

Number of total reads
16503175
Reads aligned (%)
96.6
Duplicates removed (%)
8.9
Number of peaks
19280 (qval < 1E-05)

Base call quality data from DBCLS SRA