SRX176652
GSM985056: E36 Eed -/- H3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E36 ES cells
cell line
E36
strain
129/Ola
chip antibody
H3
antibody vendor/catalog/lot
Abcam/No 1791/GR50122-1

Sequenced DNA Library

library_name
GSM985056: E36_Eed_-/-_H3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38405374
Reads aligned (%)
98.1
Duplicates removed (%)
15.2
Number of peaks
523 (qval < 1E-05)

mm9

Number of total reads
38405374
Reads aligned (%)
97.9
Duplicates removed (%)
15.2
Number of peaks
590 (qval < 1E-05)

Base call quality data from DBCLS SRA