SRX176651
GSM985055: E36 Eed +/+ H3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
E36 ES cells
cell line
E36
strain
129/Ola
chip antibody
H3
antibody vendor/catalog/lot
Abcam/No 1791/GR50122-1

Sequenced DNA Library

library_name
GSM985055: E36_Eed_+/+_H3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35356839
Reads aligned (%)
98.0
Duplicates removed (%)
14.6
Number of peaks
500 (qval < 1E-05)

mm9

Number of total reads
35356839
Reads aligned (%)
97.8
Duplicates removed (%)
14.7
Number of peaks
552 (qval < 1E-05)

Base call quality data from DBCLS SRA