Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
22Rv1
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
prostate cancer cells
cell line
22RV1
chip antibody
none
chip antibody manufacturer
none
treatment
none

Sequenced DNA Library

library_name
GSM984403: 22RV1 input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
12425018
Reads aligned (%)
96.0
Duplicates removed (%)
3.8
Number of peaks
576 (qval < 1E-05)

hg19

Number of total reads
12425018
Reads aligned (%)
95.0
Duplicates removed (%)
5.0
Number of peaks
716 (qval < 1E-05)

Base call quality data from DBCLS SRA