SRX176069
GSM984401: C42B input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

source_name
prostate cancer cells
cell line
C4-2B
chip antibody
none
chip antibody manufacturer
none
treatment
none

Sequenced DNA Library

library_name
GSM984401: C42B input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9829101
Reads aligned (%)
96.1
Duplicates removed (%)
3.0
Number of peaks
454 (qval < 1E-05)

hg19

Number of total reads
9829101
Reads aligned (%)
95.0
Duplicates removed (%)
4.3
Number of peaks
637 (qval < 1E-05)

Base call quality data from DBCLS SRA