SRX176059
GSM984391: C42B FOXA1 vehicle; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

source_name
prostate cancer cells
cell line
C4-2B
chip antibody
FOXA1
chip antibody manufacturer
Abcam
treatment
EtOH vehicle treated

Sequenced DNA Library

library_name
GSM984391: C42B FOXA1 vehicle
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
13080288
Reads aligned (%)
90.8
Duplicates removed (%)
5.1
Number of peaks
7196 (qval < 1E-05)

hg19

Number of total reads
13080288
Reads aligned (%)
89.9
Duplicates removed (%)
6.3
Number of peaks
7197 (qval < 1E-05)

Base call quality data from DBCLS SRA