SRX176049
GSM984381: C42B AR vehicle 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

source_name
prostate cancer cells
cell line
C4-2B
chip antibody
AR
chip antibody manufacturer
Abcam
treatment
EtOH vehicle treated

Sequenced DNA Library

library_name
GSM984381: C42B AR vehicle 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
32578344
Reads aligned (%)
77.5
Duplicates removed (%)
20.2
Number of peaks
1992 (qval < 1E-05)

hg38

Number of total reads
32578344
Reads aligned (%)
79.9
Duplicates removed (%)
18.6
Number of peaks
2281 (qval < 1E-05)

Base call quality data from DBCLS SRA