Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF3

Cell type

Cell type Class
Epidermis
Cell type
Dermal fibroblast
NA
NA

Attributes by original data submitter

Sample

source_name
overexpressed ATF3 ChIPSeq
tissue
abdomen skin
cell type
primary dermal fibroblasts
passage
4-6
chip antibody
ATF3 (SantaCruz Cat.No.188 C-19)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
34372828
Reads aligned (%)
95.2
Duplicates removed (%)
4.1
Number of peaks
8380 (qval < 1E-05)

hg19

Number of total reads
34372828
Reads aligned (%)
94.3
Duplicates removed (%)
5.5
Number of peaks
7976 (qval < 1E-05)

Base call quality data from DBCLS SRA