Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
KP22_input
cell line
KP22
cell type
tumor-derived cell line
genotype/variation
Trp53-/-;Rb1-/-
nfib expression level
Nfib low
sample type
input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Nuclei were lysed and sonicated, genomic DNA was isolated with antibody and purified with RNAse and Proteinase K before being purified with QIAquick PCR purification kit (Qiagen). Library was generated following Clontech low input with 1ng of ChIP product. 12 samples were pooled for Illumina Hiseq.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
15403171
Reads aligned (%)
95.1
Duplicates removed (%)
19.2
Number of peaks
965 (qval < 1E-05)

mm9

Number of total reads
15403171
Reads aligned (%)
94.9
Duplicates removed (%)
19.4
Number of peaks
942 (qval < 1E-05)

Base call quality data from DBCLS SRA