SRX174820
GSM983105: H3122 FOXA1 ab23738; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
FOXA1

Cell type

Cell type Class
Lung
Cell type
NCI-H3122
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
H3122_FOXA1_ab23738
cell line
NCI-H3122
antibody
FOXA1 [Abcam, ab23738 (lot 947435)]

Sequenced DNA Library

library_name
GSM983105: H3122_FOXA1_ab23738
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25821569
Reads aligned (%)
98.9
Duplicates removed (%)
8.9
Number of peaks
32780 (qval < 1E-05)

hg19

Number of total reads
25821569
Reads aligned (%)
98.2
Duplicates removed (%)
10.1
Number of peaks
32689 (qval < 1E-05)

Base call quality data from DBCLS SRA