SRX174819
GSM983104: H3122 NKX2-1 BL4000 2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NKX2-1

Cell type

Cell type Class
Lung
Cell type
NCI-H3122
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
H3122_NKX2-1_BL4000_2
cell line
NCI-H3122
antibody
NKX2-1 [Bethyl Laboratories, BL4000]

Sequenced DNA Library

library_name
GSM983104: H3122_NKX2-1_BL4000_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25640589
Reads aligned (%)
98.9
Duplicates removed (%)
5.6
Number of peaks
37645 (qval < 1E-05)

hg19

Number of total reads
25640589
Reads aligned (%)
98.3
Duplicates removed (%)
6.8
Number of peaks
37500 (qval < 1E-05)

Base call quality data from DBCLS SRA