SRX174817
GSM983102: H2087 NKX2-1 BL4000; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NKX2-1

Cell type

Cell type Class
Lung
Cell type
NCI-H2087
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Non-Small Cell

Attributes by original data submitter

Sample

source_name
H2087_NKX2-1_BL4000
cell line
NCI-H2087
antibody
NKX2-1 [Bethyl Laboratories, BL4000]

Sequenced DNA Library

library_name
GSM983102: H2087_NKX2-1_BL4000
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
24000000
Reads aligned (%)
95.3
Duplicates removed (%)
3.0
Number of peaks
3355 (qval < 1E-05)

hg38

Number of total reads
24000000
Reads aligned (%)
97.3
Duplicates removed (%)
1.6
Number of peaks
4686 (qval < 1E-05)

Base call quality data from DBCLS SRA