Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NKX2-1

Cell type

Cell type Class
Lung
Cell type
HCC1819
Primary Tissue
Lung
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
H1819_NKX2-1_BL4000
cell line
NCI-H1819
antibody
NKX2-1 [Bethyl Laboratories, BL4000]

Sequenced DNA Library

library_name
GSM983100: H1819_NKX2-1_BL4000
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
24000000
Reads aligned (%)
94.7
Duplicates removed (%)
3.5
Number of peaks
5681 (qval < 1E-05)

hg38

Number of total reads
24000000
Reads aligned (%)
96.7
Duplicates removed (%)
2.2
Number of peaks
5765 (qval < 1E-05)

Base call quality data from DBCLS SRA