SRX174813
GSM983098: H3122 NKX2-1 BL4000; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NKX2-1

Cell type

Cell type Class
Lung
Cell type
NCI-H3122
Primary Tissue
Lung
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
H3122_NKX2-1_BL4000
cell line
NCI-H3122
antibody
NKX2-1 [Bethyl Laboratories, BL4000]

Sequenced DNA Library

library_name
GSM983098: H3122_NKX2-1_BL4000
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
16030459
Reads aligned (%)
57.0
Duplicates removed (%)
2.4
Number of peaks
872 (qval < 1E-05)

hg38

Number of total reads
16030459
Reads aligned (%)
58.3
Duplicates removed (%)
1.9
Number of peaks
839 (qval < 1E-05)

Base call quality data from DBCLS SRA