SRX1745500
GSM2144629: Input 20 fix; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
EpiSC
NA
NA

Attributes by original data submitter

Sample

source_name
Wnt3KO EpiSCs
tissue
Wnt3KO EpiSCs
experiment type
ChIP-seq
antibody
none
wnt stimulation
IWP2

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslink, Lyse, Sonication Illumina Truseq DNA library protocol

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
27529635
Reads aligned (%)
96.5
Duplicates removed (%)
8.1
Number of peaks
592 (qval < 1E-05)

mm9

Number of total reads
27529635
Reads aligned (%)
96.3
Duplicates removed (%)
8.2
Number of peaks
652 (qval < 1E-05)

Base call quality data from DBCLS SRA