Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
cell line
CJ7
mouse strain
129S1/SVImJ
antibody
N/A

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed as previously described (Lee et al., 2006) by using Zfp281 antibody (Abcam #ab101318). 25 μl of 70 ng/μl input and 5 ng/μl Zfp281-ChIPed DNA to prepare input and Zfp281 ChIP-seq libraries. Massively parallel sequencing was performed with the Illumina HiSeq 2500 Sequencing System according to the manufacturer’s protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
57056563
Reads aligned (%)
97.8
Duplicates removed (%)
11.4
Number of peaks
530 (qval < 1E-05)

mm9

Number of total reads
57056563
Reads aligned (%)
97.6
Duplicates removed (%)
11.4
Number of peaks
522 (qval < 1E-05)

Base call quality data from DBCLS SRA