Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
Roberts syndrome (vu1199-F SV40)
antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Samples were formaldehyde-crosslinked, lysed, sonicated, presipitated, and reverse crosslinked. Illumina sample libraries were prepared according to NEB protocol E6040

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
47263788
Reads aligned (%)
94.5
Duplicates removed (%)
4.1
Number of peaks
1413 (qval < 1E-05)

hg19

Number of total reads
47263788
Reads aligned (%)
93.5
Duplicates removed (%)
5.8
Number of peaks
1236 (qval < 1E-05)

Base call quality data from DBCLS SRA