Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MCM3

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
Roberts syndrome (vu1199-F SV40)
antibody
MCM3 (Bethyl, A300-192A)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Samples were formaldehyde-crosslinked, lysed, sonicated, presipitated, and reverse crosslinked. Illumina sample libraries were prepared according to NEB protocol E6040

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
44646201
Reads aligned (%)
73.4
Duplicates removed (%)
12.9
Number of peaks
1966 (qval < 1E-05)

hg38

Number of total reads
44646201
Reads aligned (%)
76.6
Duplicates removed (%)
10.4
Number of peaks
2276 (qval < 1E-05)

Base call quality data from DBCLS SRA