SRX173208
GSM980664: GR Dex 2011; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR3C1

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP-1F5 cells
cell type
Prostate epithelial cells derived from metastatic prostate carcinoma, genetically engineered to express rat glucocorticoid receptor (Cleutjens et al., 1997).
passages
15-35
cell line
LNCaP-1F5 cells
treatment
100 nM Dex
chip antibody
GR (Widen et al. 2000)

Sequenced DNA Library

library_name
GSM980664: GR Dex 2011
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
22244693
Reads aligned (%)
83.9
Duplicates removed (%)
10.0
Number of peaks
14010 (qval < 1E-05)

hg38

Number of total reads
22244693
Reads aligned (%)
85.8
Duplicates removed (%)
8.8
Number of peaks
13988 (qval < 1E-05)

Base call quality data from DBCLS SRA