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For hg19
BigWig
Peak-call (q < 1E-05)
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For hg38
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NR3C1
wikigenes
PDBj
CellType: LNCAP
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX173208
GSM980664: GR Dex 2011; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
NR3C1
Cell type
Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
LNCaP-1F5 cells
cell type
Prostate epithelial cells derived from metastatic prostate carcinoma, genetically engineered to express rat glucocorticoid receptor (Cleutjens et al., 1997).
passages
15-35
cell line
LNCaP-1F5 cells
treatment
100 nM Dex
chip antibody
GR (Widen et al. 2000)
Sequenced DNA Library
library_name
GSM980664: GR Dex 2011
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
22244693
Reads aligned (%)
83.9
Duplicates removed (%)
10.0
Number of peaks
14010 (qval < 1E-05)
hg38
Number of total reads
22244693
Reads aligned (%)
85.8
Duplicates removed (%)
8.8
Number of peaks
13988 (qval < 1E-05)
Base call quality data from
DBCLS SRA