SRX173204
GSM980660: GR Dex; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NR3C1

Cell type

Cell type Class
Prostate
Cell type
VCaP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
VCaP
cell type
Prostate epithelial cells derived from vertebral bone metastasis from patient with hormone refractory cancer.
passages
15-35
cell line
VCaP
treatment
100 nM DEX
chip antibody
GR (BuGr2, Millipore and Mab-010-050, Diagenode)
chip antibody manufacturer
Millipore and Diagenode

Sequenced DNA Library

library_name
GSM980660: GR Dex
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
32966369
Reads aligned (%)
89.8
Duplicates removed (%)
10.5
Number of peaks
10116 (qval < 1E-05)

hg19

Number of total reads
32966369
Reads aligned (%)
89.3
Duplicates removed (%)
11.3
Number of peaks
10485 (qval < 1E-05)

Base call quality data from DBCLS SRA