Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Prostate
Cell type
LNCAP
Primary Tissue
Prostate
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
LNCaP-1F5 cells
cell type
Prostate epithelial cells derived from metastatic prostate carcinoma, genetically engineered to express rat glucocorticoid receptor (Cleutjens et al., 1997).
passages
15-35
cell line
LNCaP-1F5 cells
treatment
1000 nM RU486
chip antibody
AR (Kang et al. 2004; Sahu et al. 2011)

Sequenced DNA Library

library_name
GSM980650: AR RU486 rep 2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
16850237
Reads aligned (%)
93.6
Duplicates removed (%)
3.6
Number of peaks
766 (qval < 1E-05)

hg38

Number of total reads
16850237
Reads aligned (%)
96.0
Duplicates removed (%)
2.1
Number of peaks
501 (qval < 1E-05)

Base call quality data from DBCLS SRA