SRX172951
GSM979717: IgG ctrl ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ctrl.2, 2i
cell type
embryonic stem cell
passage
14
shRNA
control
chip antibody
IgG antibodies (Santa Cruz, sc-2025)

Sequenced DNA Library

library_name
GSM979717: IgG_ctrl_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28184216
Reads aligned (%)
96.8
Duplicates removed (%)
13.0
Number of peaks
547 (qval < 1E-05)

mm9

Number of total reads
28184216
Reads aligned (%)
96.6
Duplicates removed (%)
13.1
Number of peaks
635 (qval < 1E-05)

Base call quality data from DBCLS SRA