SRX172946
GSM980194: IgG mock control JP386 ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Nephron progenitor
NA
NA

Attributes by original data submitter

Sample

source_name
fresh Six2-expressing cells
chip antibody
rabbit igg
strain
mixed background
developmental stage
E16.5
treatment
kidney
cell type
nephron progenitor
genotype
transgenic Six2GFPcre-positive

Sequenced DNA Library

library_name
GSM980194: IgG mock control JP386_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12293913
Reads aligned (%)
91.6
Duplicates removed (%)
16.4
Number of peaks
473 (qval < 1E-05)

mm9

Number of total reads
12293913
Reads aligned (%)
91.3
Duplicates removed (%)
16.6
Number of peaks
548 (qval < 1E-05)

Base call quality data from DBCLS SRA