SRX172942
GSM980190: total DNA input control for JP332 JP331 ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Nephron progenitor
NA
NA

Attributes by original data submitter

Sample

source_name
BIO-treated Six2-expressing cells
chip antibody
none (input control)
strain
mixed background
developmental stage
E16.5
treatment
4uM BIO
cell type
nephron progenitor
genotype
transgenic Six2GFPcre-positive

Sequenced DNA Library

library_name
GSM980190: total DNA input control for JP332 JP331_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
35581118
Reads aligned (%)
81.7
Duplicates removed (%)
35.8
Number of peaks
607 (qval < 1E-05)

mm9

Number of total reads
35581118
Reads aligned (%)
81.5
Duplicates removed (%)
35.9
Number of peaks
728 (qval < 1E-05)

Base call quality data from DBCLS SRA