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Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: TP53
wikigenes
PDBj
CellType: MCF 10A
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1728403
mcf10a EVp53
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
TP53
Cell type
Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease
Attributes by original data submitter
Sample
isolate
not available
age
36
biomaterial_provider
ATCC
sex
female
tissue
nontumorigenic mammary epithelial
cell_line
MCF10A
sample_type
IP DNA
treatment
No treatment
Antibody
Anti-p53 DO-1
Sequenced DNA Library
library_name
mcf10a_EVp53
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
27482537
Reads aligned (%)
45.4
Duplicates removed (%)
52.2
Number of peaks
760 (qval < 1E-05)
hg38
Number of total reads
27482537
Reads aligned (%)
47.2
Duplicates removed (%)
50.6
Number of peaks
809 (qval < 1E-05)
Base call quality data from
DBCLS SRA