SRX1728402
mcf10a EVinput

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF 10A
Primary Tissue
Breast
Tissue Diagnosis
Fibrocystic Disease

Attributes by original data submitter

Sample

isolate
not available
age
36
biomaterial_provider
ATCC
sex
female
tissue
nontumorigenic mammary epithelial
cell_line
MCF10A
sample_type
input DNA
treatment
No treatment
Antibody
none

Sequenced DNA Library

library_name
mcf10a_EVinput
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
57840295
Reads aligned (%)
97.8
Duplicates removed (%)
34.0
Number of peaks
1500 (qval < 1E-05)

hg19

Number of total reads
57840295
Reads aligned (%)
97.0
Duplicates removed (%)
35.7
Number of peaks
1170 (qval < 1E-05)

Base call quality data from DBCLS SRA