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For hg38
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: U-266
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1726519
GSM2132556: U266 H3K27AC; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Blood
Cell type
U-266
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma
Attributes by original data submitter
Sample
source_name
Multiple Myeloma
cell line
U266
input
U266_WCE_2
treatment
none
barcode
CGATGT
antibody
anti H3K27AC
antibody maker
Abcam
antibody catalog number
AB4729
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and chromatin-DNA complexes were isolated with antibody. Libraries were prepared using the Rubicon Thruplex FD library preparation kit (cat#: 400427) per manufacturers instructions.
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
68357881
Reads aligned (%)
96.3
Duplicates removed (%)
15.8
Number of peaks
28469 (qval < 1E-05)
hg19
Number of total reads
68357881
Reads aligned (%)
96.1
Duplicates removed (%)
16.4
Number of peaks
28483 (qval < 1E-05)
Base call quality data from
DBCLS SRA