Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
MM.1S
Primary Tissue
Blood
Tissue Diagnosis
Multiple Myeloma

Attributes by original data submitter

Sample

source_name
Multiple Myeloma
cell line
MM1.S
input
N/A
treatment
none
barcode
N/A
antibody
N/A
antibody maker
N/A
antibody catalog number
N/A

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and chromatin-DNA complexes were isolated with antibody. Libraries were prepared using the Rubicon Thruplex FD library preparation kit (cat#: 400427) per manufacturers instructions.

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
82571942
Reads aligned (%)
94.6
Duplicates removed (%)
20.8
Number of peaks
3781 (qval < 1E-05)

hg19

Number of total reads
82571942
Reads aligned (%)
92.7
Duplicates removed (%)
22.9
Number of peaks
2894 (qval < 1E-05)

Base call quality data from DBCLS SRA