SRX172578
GSM970535: H3 WT; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem Cell
background mouse strain
129SvJae/C57BL/6
chip antibody
H3
antibody vendor/catalog
Abcam, ab1791
genotype/variation
WT

Sequenced DNA Library

library_name
GSM970535: H3_WT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
77005972
Reads aligned (%)
67.3
Duplicates removed (%)
13.3
Number of peaks
662 (qval < 1E-05)

mm9

Number of total reads
77005972
Reads aligned (%)
67.1
Duplicates removed (%)
13.3
Number of peaks
793 (qval < 1E-05)

Base call quality data from DBCLS SRA