SRX172566
GSM970523: Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic Stem Cell
background mouse strain
129SvJae/C57BL/6
chip antibody
none
genotype/variation
BirA-expressing

Sequenced DNA Library

library_name
GSM970523: Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
39425807
Reads aligned (%)
98.6
Duplicates removed (%)
6.6
Number of peaks
714 (qval < 1E-05)

mm9

Number of total reads
39425807
Reads aligned (%)
98.5
Duplicates removed (%)
6.7
Number of peaks
858 (qval < 1E-05)

Base call quality data from DBCLS SRA