Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Jund

Cell type

Cell type Class
Blood
Cell type
Th17 Cells
MeSH Description
A subset of helper-effector T-lymphocytes which synthesize and secrete INTERLEUKINS IL-17; IL-17F; and IL-22. These cytokines are involved in host defenses and tissue inflammation in autoimmune diseases.

Attributes by original data submitter

Sample

source_name
Th17 Cells
strain
C57BL/6
cell type
Th17 Cells
tissue
Spleen
chip antibody
JunD (Santa Cruz, sc-74, J-1411)

Sequenced DNA Library

library_name
GSM978771: Th17 JunD
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
41251706
Reads aligned (%)
97.7
Duplicates removed (%)
55.1
Number of peaks
53424 (qval < 1E-05)

mm9

Number of total reads
41251706
Reads aligned (%)
97.6
Duplicates removed (%)
55.1
Number of peaks
53414 (qval < 1E-05)

Base call quality data from DBCLS SRA