SRX172335
GSM978759: IRF4KO CD4 T +IL21 IRF4; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Irf4

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T Cells
strain
C57BL/6
cell type
CD4+ T Cells
tissue
Spleen
chip antibody
IRF4 (Santa Cruz, sc-6059, k1209)

Sequenced DNA Library

library_name
GSM978759: IRF4KO CD4 T +IL21 IRF4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
6663947
Reads aligned (%)
67.0
Duplicates removed (%)
16.4
Number of peaks
543 (qval < 1E-05)

mm9

Number of total reads
6663947
Reads aligned (%)
66.9
Duplicates removed (%)
16.8
Number of peaks
592 (qval < 1E-05)

Base call quality data from DBCLS SRA