SRX172330
GSM978754: WT CD4 T -IL21 panJun; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Jun

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T Cells
strain
C57BL/6
cell type
CD4+ T Cells
tissue
Spleen
chip antibody
cJUN (Abcam, ab31419, GR30-33)

Sequenced DNA Library

library_name
GSM978754: WT CD4 T -IL21 panJun
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28755220
Reads aligned (%)
98.4
Duplicates removed (%)
45.5
Number of peaks
892 (qval < 1E-05)

mm9

Number of total reads
28755220
Reads aligned (%)
98.3
Duplicates removed (%)
45.6
Number of peaks
881 (qval < 1E-05)

Base call quality data from DBCLS SRA