SRX172329
GSM978753: WT CD4 T +IL21 IRF8; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Irf8

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T Cells
strain
C57BL/6
cell type
CD4+ T Cells
tissue
Spleen
chip antibody
IRF8 (from Keiko Ozato, not commercial available)

Sequenced DNA Library

library_name
GSM978753: WT CD4 T +IL21 IRF8
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
18084539
Reads aligned (%)
96.9
Duplicates removed (%)
53.0
Number of peaks
426 (qval < 1E-05)

mm9

Number of total reads
18084539
Reads aligned (%)
96.8
Duplicates removed (%)
53.1
Number of peaks
421 (qval < 1E-05)

Base call quality data from DBCLS SRA