SRX172328
GSM978752: WT CD4 T -IL21 IRF8; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Irf8

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T Cells
strain
C57BL/6
cell type
CD4+ T Cells
tissue
Spleen
chip antibody
IRF8 (from Keiko Ozato, not commercial available)

Sequenced DNA Library

library_name
GSM978752: WT CD4 T -IL21 IRF8
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17640378
Reads aligned (%)
96.5
Duplicates removed (%)
67.6
Number of peaks
99 (qval < 1E-05)

mm9

Number of total reads
17640378
Reads aligned (%)
96.4
Duplicates removed (%)
67.6
Number of peaks
91 (qval < 1E-05)

Base call quality data from DBCLS SRA