SRX172325
GSM978749: WT CD4 T IgG; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T Cells
strain
C57BL/6
cell type
CD4+ T Cells
tissue
Spleen
chip antibody
Rabbit IgG (R&D, AB-105-C, ER11)

Sequenced DNA Library

library_name
GSM978749: WT CD4 T IgG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14750342
Reads aligned (%)
96.5
Duplicates removed (%)
58.9
Number of peaks
487 (qval < 1E-05)

mm9

Number of total reads
14750342
Reads aligned (%)
96.4
Duplicates removed (%)
59.1
Number of peaks
509 (qval < 1E-05)

Base call quality data from DBCLS SRA