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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: KDM5A
wikigenes
PDBj
CellType: T-47D
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1721565
GSM2131194: T47D MK2206 KDM5A; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
KDM5A
Cell type
Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal
Attributes by original data submitter
Sample
source_name
T47D breast cancer cells
cell type
T47D
chip antibody
KDM5A #1416 (gift Kaelin Lab DFCI)
treatment
MK2206
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked, lysed in SDS lysis buffer, and sonicated. ThruPLEX-FD Prep kit, Rubicon Genomics
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
109975173
Reads aligned (%)
81.2
Duplicates removed (%)
14.1
Number of peaks
4832 (qval < 1E-05)
hg38
Number of total reads
109975173
Reads aligned (%)
83.4
Duplicates removed (%)
12.6
Number of peaks
5589 (qval < 1E-05)
Base call quality data from
DBCLS SRA