Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5A

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D breast cancer cells
cell type
T47D
chip antibody
KDM5A #1416 (gift Kaelin Lab DFCI)
treatment
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked, lysed in SDS lysis buffer, and sonicated. ThruPLEX-FD Prep kit, Rubicon Genomics

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
98724674
Reads aligned (%)
81.2
Duplicates removed (%)
14.4
Number of peaks
3947 (qval < 1E-05)

hg38

Number of total reads
98724674
Reads aligned (%)
83.4
Duplicates removed (%)
12.9
Number of peaks
4633 (qval < 1E-05)

Base call quality data from DBCLS SRA