SRX1721543
GSM2131187: T47D DMSO H3K4me3 24; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D breast cancer cells
cell type
T47D
chip antibody
H3K4me3 Abcam (Ab8580)
treatment
DMSO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Cells were crosslinked, lysed in SDS lysis buffer, and sonicated. ThruPLEX-FD Prep kit, Rubicon Genomics

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
88012306
Reads aligned (%)
85.7
Duplicates removed (%)
18.8
Number of peaks
39278 (qval < 1E-05)

hg19

Number of total reads
88012306
Reads aligned (%)
85.0
Duplicates removed (%)
19.8
Number of peaks
39339 (qval < 1E-05)

Base call quality data from DBCLS SRA