Antigen

Antigen Class

TFs and others

Antigen

ETV1

Cell type

Cell type Class

Epidermis

Cell type

A-375

Primary Tissue

Skin

Tissue Diagnosis

Melanoma

Sample

source_name

A375 Human melanoma Cells

cell line

A375

antibody

ETV1

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Chromatin was isolated and sheared. For ETV1 IP, chromatin was IP'd using anti-ETV1 antibody (abcam ab81086) and magnetic protein A/G beads.The immunoprecipate was washed and eluted using standing conditions. RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

36649318

Reads aligned (%)

93.2

Duplicates removed (%)

2.1

Number of peaks

15728 (qval < 1E-05)

hg19

Number of total reads

36649318

Reads aligned (%)

92.7

Duplicates removed (%)

3.1

Number of peaks

15632 (qval < 1E-05)