Antigen

Antigen Class

TFs and others

Antigen

ETV1

Cell type

Cell type Class

Digestive tract

Cell type

GIST-T1

NA

NA

Sample

source_name

GIST882 Human GIST Cells

cell line

GIST-T1

antibody

ETV1

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Chromatin was isolated and sheared. For ETV1 IP, chromatin was IP'd using anti-ETV1 antibody (abcam ab81086) and magnetic protein A/G beads.The immunoprecipate was washed and eluted using standing conditions. RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

hg38

Number of total reads

25465930

Reads aligned (%)

54.8

Duplicates removed (%)

5.2

Number of peaks

2351 (qval < 1E-05)

hg19

Number of total reads

25465930

Reads aligned (%)

54.4

Duplicates removed (%)

6.4

Number of peaks

2201 (qval < 1E-05)