Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ETV1

Cell type

Cell type Class
Digestive tract
Cell type
GIST-T1
NA
NA

Attributes by original data submitter

Sample

source_name
GIST882 Human GIST Cells
cell line
GIST-T1
antibody
ETV1

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin was isolated and sheared. For ETV1 IP, chromatin was IP'd using anti-ETV1 antibody (abcam ab81086) and magnetic protein A/G beads.The immunoprecipate was washed and eluted using standing conditions. RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
25465930
Reads aligned (%)
50.9
Duplicates removed (%)
6.4
Number of peaks
2201 (qval < 1E-05)

hg38

Number of total reads
25465930
Reads aligned (%)
52.0
Duplicates removed (%)
5.2
Number of peaks
2351 (qval < 1E-05)

Base call quality data from DBCLS SRA