Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Digestive tract

Cell type

GIST-T1

NA

NA

Sample

source_name

GIST-T1 Human GIST Cells

cell line

GIST-T1

antibody

none

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Chromatin was isolated and sheared. For ETV1 IP, chromatin was IP'd using anti-ETV1 antibody (abcam ab81086) and magnetic protein A/G beads.The immunoprecipate was washed and eluted using standing conditions. RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

18156347

Reads aligned (%)

81.7

Duplicates removed (%)

2.7

Number of peaks

547 (qval < 1E-05)

hg19

Number of total reads

18156347

Reads aligned (%)

81.1

Duplicates removed (%)

3.8

Number of peaks

618 (qval < 1E-05)