Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
Intestinal crypt
NA
NA

Attributes by original data submitter

Sample

source_name
Crypt
strain
C57BL/6
genotype/variation
Lgr5Gfp-CreERT2
antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit (Part# 0801-0303).

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
52801892
Reads aligned (%)
95.4
Duplicates removed (%)
14.8
Number of peaks
619 (qval < 1E-05)

mm9

Number of total reads
52801892
Reads aligned (%)
95.1
Duplicates removed (%)
14.8
Number of peaks
710 (qval < 1E-05)

Base call quality data from DBCLS SRA