Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C2C12 myotubes, WCE
cell type
C2C12 myotubes

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The chromatin immunoprecipitation (ChIP) was performed according to the Agilent Mammalian ChIP-on-ChIP protocol version 10.0 with around 1x10^8 C2C12 cells. Magnetic beads (Dynabeads® Protein G, Invitrogen) couted with the monoclonal anit-ERRa antibody (ERRa Rabbit Monoclonal Antibody, Clone ID: EPR46Y, Epitomocs). ChIP DNA libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
258091274
Reads aligned (%)
93.6
Duplicates removed (%)
56.9
Number of peaks
1536 (qval < 1E-05)

mm9

Number of total reads
258091274
Reads aligned (%)
93.4
Duplicates removed (%)
56.8
Number of peaks
1699 (qval < 1E-05)

Base call quality data from DBCLS SRA