Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PGR

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
Breast cancer cells
tissue type
ER+/PRA-/PRB+ T47D cell models
er/pr status
ER+/PRA-/PRB+
drug treatment
10 nM Estradiol
hormone exposure time
45 minutes
chip antibody
anti-PR (inhouse KD68)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Hormone-treated were harvested and ChIP was performed as per the directions provided in materials and method (ChIP and ChIP-sequencing; reChIP and reChIP-sequencing) ChIP-seq and reChIP-seq libraries were prepared using Kapa ChIP-seq kits. Details of library preparation strategy are provided in the materials and methods section (ChIP and ChIP-seq; reChIP and reChIP-seq) of the paper.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
30143502
Reads aligned (%)
97.6
Duplicates removed (%)
5.7
Number of peaks
802 (qval < 1E-05)

hg19

Number of total reads
30143502
Reads aligned (%)
97.0
Duplicates removed (%)
7.1
Number of peaks
1012 (qval < 1E-05)

Base call quality data from DBCLS SRA