SRX170719
GSM972971: WT Pbx1 Input; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic trunk
NA
NA

Attributes by original data submitter

Sample

source_name
E11.5 Embryo Trunk
strain
C57BL/6
tissue
embryo trunk
developmental stage
embryonic day 11.5
chip antibody
none

Sequenced DNA Library

library_name
GSM972971: WT Pbx1 Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
42879000
Reads aligned (%)
97.1
Duplicates removed (%)
38.3
Number of peaks
540 (qval < 1E-05)

mm9

Number of total reads
42879000
Reads aligned (%)
96.9
Duplicates removed (%)
38.4
Number of peaks
642 (qval < 1E-05)

Base call quality data from DBCLS SRA