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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Embryonic trunk
ATCC
MeSH
RIKEN BRC
SRX170718
GSM972970: WT Prep Input; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Embryo
Cell type
Embryonic trunk
NA
NA
Attributes by original data submitter
Sample
source_name
E11.5 Embryo Trunk
strain
C57BL/6
tissue
embryo trunk
developmental stage
embryonic day 11.5
chip antibody
none
Sequenced DNA Library
library_name
GSM972970: WT Prep Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
15614220
Reads aligned (%)
97.5
Duplicates removed (%)
19.2
Number of peaks
331 (qval < 1E-05)
mm9
Number of total reads
15614220
Reads aligned (%)
97.3
Duplicates removed (%)
19.3
Number of peaks
434 (qval < 1E-05)
Base call quality data from
DBCLS SRA